Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs3008335 chr10:135098830 T/C 5.33E-10 294 7.47 20.23 22.83 KM Plot
CESC rs3008337 chr10:135099553 G/A 5.33E-10 294 7.47 20.23 22.83 KM Plot
CESC rs3008339 chr10:135100346 T/G 1.19E-7 293 3.33 20.23 21.73 KM Plot
CESC rs3008340 chr10:135101193 T/C 5.45E-10 293 7.47 20.23 22.83 KM Plot
CESC rs3121296 chr10:135075491 A/G 1.73E-10 295 11.6 21.97 21.27 KM Plot
CESC rs3121297 chr10:135075676 A/G 2.82E-8 294 9.03 20.23 21.4 KM Plot
CESC rs3121298 chr10:135076903 A/G 1.56E-10 297 11.6 21.85 21.23 KM Plot
CESC rs313831 chr7:65551226 C/T 7.96E-6 290 21.23 22.45 4.62 KM Plot
CESC rs313832 chr7:65550891 G/T 8.03E-6 289 21.27 22.45 4.62 KM Plot
CESC rs3138345 chr3:129154962 A/C 4.42E-5 299 14.73 20.95 21.47 KM Plot
CESC rs3216040 chr10:135092281 CA/C 4.12E-10 298 7.47 20.23 21.4 KM Plot
CESC rs336572 chr3:161068014 G/A 2.29E-5 293 30.37 20.43 19.2 KM Plot
CESC rs336580 chr3:161082982 A/T 5.23E-5 294 28.58 21.27 18.07 KM Plot
CESC rs336582 chr3:161082659 C/T 5.23E-5 294 28.58 21.27 18.07 KM Plot
CESC rs34016896 chr3:160992864 C/T 2.55E-5 293 25.03 19.68 19.4 KM Plot